Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs61055315 chr2:237536156 C/T 1.11E-16 170 25.17 24.77 3.17 KM Plot
PCPG rs61112574 chr13:37537635 G/GC 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs61130265 chr1:40519399 A/G 0.000312 175 25.2 27.78 25.17 KM Plot
PCPG rs61169668 chr1:36579763 CA/C 4.26E-11 176 10.3 25.67 25.08 KM Plot
PCPG rs61274064 chr3:80570169 AAAAACAG/A 6.03E-5 178 19.53 24.03 27.23 KM Plot
PCPG rs61284811 chr16:87331146 G/A 0 175 21.55 31.9 2.22 KM Plot
PCPG rs61313276 chr12:6592257 A/AT 0.000283 176 16.3 26.27 25.42 KM Plot
PCPG rs61338787 chr12:56695460 G/GT 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs61345371 chr1:36922605 T/C 8.27E-5 176 25.4 26.62 10.3 KM Plot
PCPG rs6150584 chr8:53836130 A/ATAAATATAAGTTCTTCT 0.000375 175 24.7 27.33 6.1 KM Plot
PCPG rs61519033 chr10:50528029 G/A 4.05E-6 175 24.85 33.13 25.17 KM Plot
PCPG rs61615335 chr3:80558979 CTGAAG/C 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs61616786 chr7:158701181 G/A 0 177 25.53 23.43 3.17 KM Plot
PCPG rs61623705 chr10:29844494 G/A 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs61707903 chr2:176200596 TG/T 0.000115 178 25.28 28.95 6.62 KM Plot